SureshKumar's Bioinformatics Blog

I am Suresh Kumar Sampathrajan. I have completed my PhD degree in bioinformatics from the University of Vienna, Austria in the year 2010. If you want to know more about me and my research,please click the menus at the top.

I have started this bioinformatics blog mainly for undegraduate and postgraduate students of bioinformatics. This blog will serve as an open resource material for the students and for those who wish to know about bionformatics. This blog contains video tutorials, tips, bioinformatics software downloads, articles on bioinformatics and career opportunities.

Sequence Manipulation Suite for sequence analysis

The Sequence Manipulation Suite (SMS) is a collection of JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences.
The SMS is divided into different sections like
1.Format conversion - For combining and coverting from one format to another format
2.sequence analysis - It has range of programmes for analysing the sequences by pairwise alignment, translating, finding patterns etc
3.Sequence Figures - This section has programmes like grouping the protein, colouring the sequences etc
4.Random sequences - It contains programmes like mutating the sequences, shfulling etc
5.Miscallaneous - It contains references of IUPAC codes, genetic codes.

It can be mirrored on your website or it can be run locally on your computer.

  • To mirror the Sequence Manipulation Suite: Extract or sms2.tar.gz and place the resulting sms2 directory into a directory from which your server will serve HTML files.
  • To run the Sequence Manipulation Suite locally: Extract or sms2.tar.gz and load index.html from the resulting sms2 directory into your web browser.

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